Hello Chad,
I understand what you're going through. (As I'm sure most the people here do as well) It's a very difficult journey you have just begun. The road is very bumpy. The air is foggy. It is very painful to have everything you "knew" and "believed" get shattered before your eyes. It's bad enough to have your religion "destroyed", but even worse, that the SAME Book you thought you understood and believed, be the Book that does the destruction. I discovered this site back in February, and it's been a gruesome, tough battle since then.
Paul had it even rougher, Jesus physically revealed His Glory to him on the road to Damascus, forced Paul to his knees and took his sight. But in the same way, this is what happens to every one of us, whom Christ reveals Himself to. We are thrusted to ground, and are sight is taken from us. And as Paul was, we must be lead down the road toward the Truth, and must "re-learn" everything we thought we knew.
There was a few weeks for me as well, that I had some doubts that the Bible was even true, and if Jesus was even real. (Not willingly, I was just overwhelmed with everything that was happening to me emotionally, mentally, spiritually, even physically)
But don't worry, friend, these "fiery trails" are all from GOD, and He will never abandon you! Even when it feels like He isn't there, He is! There is a reason you have been called out, and when GOD determines you are ready, He will begin to show you.
Though you are weak, you will become strong!
Christopher.